Mini Cherry Cheesecakes Made in a Muffin Tin

These mini cheesecakes are the best little treats—creamy, classic, and easy to make. I grew up eating them, and now I make these mini cherry cheesecakes with vanilla wafers for my own family. Baked in a muffin tin with a simple vanilla wafer crust, they turn into adorable, perfectly portioned cheesecake cupcakes every time.

Three mini cheesecakes topped with cherry sauce sit on a white plate. The cheesecakes are in paper liners, and the plate rests on a blue and white striped cloth.

A family favorite: Mini Cherry Cheesecakes

Stacked mini cheesecakes portrait image

These mini cherry cheesecakes with vanilla wafers are a nostalgic favorite. My mom first made them when I was a child after finding the recipe in a magazine, and the shortcut of a single vanilla wafer as the crust is what made them so appealing. They’re straightforward to prepare and always a hit.

Because they bake in a standard muffin tin, these cheesecakes are proportioned perfectly and make serving easy. Cupcake liners keep them neat and portable, so they’re ideal for gatherings, school events, or a weekday dessert that feels special.

What I love most about this recipe is how little effort it takes to get a rich, creamy result. No crumbling or pressing of a graham cracker crust—just drop a vanilla wafer into each liner and spoon the cheesecake batter on top. After baking and cooling, a spoonful of cherry pie filling finishes them beautifully.

Mini cheesecakes in white cupcake liners topped with glossy red cherries are arranged on a white cake stand.

Why you’ll love this recipe

  • Quick and easy: Ready in under an hour using simple ingredients and basic techniques.
  • Perfect for sharing: Mini size makes them ideal for parties, potlucks, and dessert tables.
  • Customizable: Use cherry topping as shown or swap in your favorite fruit filling or sauce.

How to Make Mini Cherry Cheesecakes

Ingredients on a wooden board including sugar, cherry pie filling, eggs, vanilla wafers and cupcake liners.
Cream cheese blocks and small bowls of sugar and vanilla on a towel.

These mini cheesecakes require just a few pantry staples and a muffin tin. Below is a concise ingredient list and step-by-step instructions so you can make them easily at home.

Placing vanilla wafers into paper cupcake liners arranged on a baking tray.

Ingredients

  • 12 vanilla wafers
  • 12 cupcake liners
  • Two 8-ounce packages cream cheese, softened
  • 3/4 cup white sugar
  • 2 large eggs
  • 1 teaspoon vanilla extract
  • 1 tablespoon lemon juice (optional)
  • One 21-ounce can cherry pie filling (or your preferred fruit topping)

Instructions

  1. Preheat your oven to 350°F (175°C).
  2. Line a 12-cup muffin tin with cupcake liners. Place one vanilla wafer flat-side down into the bottom of each liner to form the crust.
  3. In a stand mixer or with a hand mixer, beat the softened cream cheese on low-medium speed until smooth and creamy.
  4. Add eggs one at a time, mixing until each is incorporated. Gradually add the sugar and mix until combined, then stir in vanilla extract and lemon juice if using.
  5. Spoon the cheesecake batter into each liner, filling about 3/4 of the way full (this leaves room for topping after baking).
  6. Bake for approximately 18–22 minutes, until the centers are just set. The cheesecakes will puff slightly while baking and settle as they cool.
  7. Allow the mini cheesecakes to cool completely. Once cooled, top each with a spoonful of cherry pie filling or your chosen fruit topping.
Person spooning cherry topping onto mini cheesecakes on a wooden board.
Close-up of a mini cheesecake topped with cherry pie filling in a white cupcake liner.

Helpful Tips

  • Soften the cream cheese: Let it sit at room temperature for the creamiest texture and to avoid lumps in the batter.
  • Don’t overfill: Fill liners only about three quarters full so the cheesecakes have room to rise and there’s space for the topping.
  • Cool completely: Let the cheesecakes cool before adding the cherry filling so the topping stays glossy and doesn’t sink into warm batter.
Mini Cherry Cheesecakes with a vanilla wafer crust are an easy, nostalgic dessert that’s perfect for any occasion. They’re quick to prepare, customizable, and always crowd-pleasers—an ideal recipe to make for family gatherings or weeknight treats alike.
Servings:
12 Mini Cheesecake Cupcakes

Recipe by Melissa Johnson.